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fund administrationApril 6, 202611 min read

QSBS and Your Fund Structure: What Emerging GPs Need to Know

By FundCore Team

Qualified Small Business Stock ("QSBS") is stock issued by a domestic C corporation that satisfies the conditions set forth in Section 1202 of the Internal Revenue Code and provides the shareholder the opportunity to exclude up to 100% of the capital gain, with a $10,000,000 (or 10 times the taxpayer's basis in the stock) per taxpayer, per issuer limitation, realized upon the sale of such stock from federal income taxation. From a VC fund GP's standpoint, the key to QSBS is understanding how (if at all) the benefits flow through to the fund and the LPs and how the QSBS eligibility requirements flow through at the level of the fund depending upon the fund's organizational structure and the manner in which QSBS investments are documented upon the date of investment. Most first-time GPs have heard of QSBS. Fewer still understand what type of fund structure is necessary to preserve the exclusion at the fund level, and how a seemingly common choice of investment structure at the fund level can render an otherwise eligible investment uneligible for the QSBS exclusion. The proper design and structuring of a fund to preserve QSBS eligibility comes at essentially zero cost and a zero downside to the GP; the downside from not getting it right can be millions of dollars in lost tax benefits to the LPs and creating a "fund II" fundraising problem down the road that is not easy to defend. There is also a corporation‑type problem for investors. S corporations (and their shareholders) can't own QSBS. The issue is one of tax treatment: when the carried interest is received as a partnership interest, then it's taxed at long‑term capital gains, and if the partnership interest is exchanged (converted) for equity in the investee corporation, it may qualify as QSBS, in which case it can be taxed at capital gains with a 100 percent exclusion of profits. The answer to whether the carried interest qualifies as QSBS, however, becomes a facts and circumstances determination if the GP is an S corporation. Most attorneys who form funds recommend that the general partner of a fund should be an LLC, so that it retains flexibility to be taxed at either long‑term capital gains or as a partnership. Section 1202 exclusions pass through pass-through entities, such as the VC limited partnership, to their respective partners in proportion to their interest in the partnership. As such, a VC fund that is structured as a limited partnership (the most common vehicle) can own and invest in QSBS stock and, subject to each LP's individual per taxpayer, per issuer limitation ($10,000,000 or 10 times the basis of each taxpayer in the qualifying stock), each individual LP's share of any gain on the sale of the investment will be eligible for the 1202 exclusion, so long as the limited partnership fund, at its level, acquired the QSBS stock from original issuance, on a direct sale from the issuer to the LP. The pass through treatment is a key feature of the QSBS exemption because it expands the benefit of the exemption across the pool of LPs. For instance, assuming a VC fund is formed with 30 LPs and the fund exits a qualifying position with a gain of $50,000,000, each LP's allocable share of the $50,000,000 of gain (to the extent such gain does not exceed the individual $10,000,000 or 10x the LP's basis limitation) may be excluded from federal taxation. This can result in $10,000,000+ of federal taxes being foregone at the aggregate level for a single exit. The eligibility requirements at the issuer level (the company in which the VC fund invests in) are more familiar, and well known in VC investing. Those requirements are: the investing company is a domestic C corporation, at the time of issuance of the stock the company does not have gross assets that exceed $50,000,000 immediately before and immediately after the issuance, the issuing corporation is in active conduct of any qualified trade or business at the time of acquisition of the stock (which does not include: professional service, financial, hotel, restaurant, etc.), and the stock must be acquired by the VC fund as an original issue from the company in exchange for cash, property, or services. In addition, a VC fund can only claim the 1202 exclusion on an exit with respect to its investment in QSBS if the VC fund can establish on a per investment level that all the conditions set forth in Section 1202 were met. This means that a VC fund manager that keeps investment level records as to the date of acquisition, the consideration paid, and the status of the company (as an entity or otherwise) upon the investment is in an ideal position to document the QSBS eligibility of each of its investments upon exit. A VC fund manager cannot document these items may face a challenge from the IRS with respect to a claimed exclusion in connection with an exit of a QSBS position even though the position qualifies under all other terms and conditions of Section 1202. Structuring Options That Impact QSBS Eligibility Most U.S. venture capital funds are formed as Delaware limited partnerships featuring a distinct general partner, which is usually an LLC. That arrangement meets the requirements for Qualified Small Business Stock (QSBS). There are, however, a number of variations that can create QSBS risk and that should be reviewed by the GP when a new fund is structured.

The most common is the secondary purchase problem. To be QSBS, you must have bought the stock when the original issue of stock of an issuing corporation. The question is: what does it mean to "buy"? If you bought shares from someone else in a second‑ or third‑purchase transaction, those shares are not QSBS (even though the shares might otherwise satisfy all of the QSBS requirements), because they are not an original issue of the corporation. A fund that buys both primary‑issue shares (from the company in a primary offering) and secondary‑issue shares (from another shareholder) should be sure that the QSBS and other shares are kept separate in the books, so the fund has a clear indication which of the shares purchased were QSBS.

How QSBS Works at the Fund Level

One VC who invested in seed companies told this story: "We led a $3M investment in 2021, and in 2024 at the exit, the acquiring company's counsel requested the stock certificate numbers and original stock subscription agreement to show it was the original issue of stock. I had to get my funds manager's records because the startup's cap table app had been migrated twice and the stock certificates and original issue papers are in our files, and not theirs. Fortunately, we made it to the finish line, but it took us three weeks and delayed the closing of the transaction."

Gross Asset test: $50M at time of stock issuance.

At the $50M gross asset test, the test is done when the stock is issued, not at exit. For example, a company may have $30M gross assets when you invest in it, and $500M gross assets at the time you exit the position. This does not preclude QSBS, which requires the company not exceed $50M at the time of purchase. However, if the company already has $50M or more gross assets when you invest, the stock you purchase with that investment is not QSBS.

Fund administrators should track this requirement: for each investment made into the portfolio of a fund, document what the total gross assets (total assets listed in the company's last balance sheet, plus the funds that were raised in this round) is at the time the stock was issued. For early stage startups, this will usually not be a challenge (especially for those that have raised less than $50M in total equity). For later stage startups, those with other assets besides cash, it should be carefully evaluated.

In addition, it must be held for more than five years to qualify for the 100% exclusion of Sec. 1202(a)(4). This is generally possible, particularly for a 10-year fund. However, for a 7-year fund with a large extension possibility, the GP and LPs' tax counsel should look carefully at whether the fund will be able to exit on the portfolio as a whole within the 5-year holding period.

State Tax Issues: What GPs Don’t Know About QSBS (and May Surprise Their LPs)

State tax treatment varies greatly from the federal rules. Under the federal rules, the Section 1202 QSBS exclusion applies nationwide. While most states conform to federal tax law and the federal QSBS exclusion, the largest states with high capital gains rates generally do not: California, Pennsylvania, Mississippi, Alabama, New Jersey, etc. In these states, the states assess their own capital gains tax on all QSBS gains that are fully excluded for federal purposes.

Thus, for LPs resident in non-conforming states, a gain is 100% excluded at the federal level but 13.3% is taxable in California (as an example). If the fund has a large concentration of California LPs, the fund tax disclosure should alert LPs to this risk and the K-1 should correctly report the QSBS gain so that LPs can then talk to their own tax counsel about state treatment.

Fund administrators should play a key role in ensuring that the fund’s K-1 preparation process is correctly reporting the QSBS gain and that LPs have all the information necessary to claim the federal exclusion. A K-1 that does not break out the QSBS gains as a separate item forces the LPs to reconstruct the information themselves and is likely to generate errors and late filing of LP returns.

How Fund Mechanics Can Affect QSBS Status

If not structured properly, many common fund mechanics can affect whether an asset remains QSBS post-investment. Subsequent investments made in a portfolio company that has already surpassed the $50 million in gross assets threshold (after the Fund invested) are not QSBS, even if the initial investment was QSBS. For these investments, a well-run fund administrator should track each separate tranche and note that the qualifying portion is separate from any non-qualifying investment.

Another common issue arises from a fund’s pro-rata rights and the exercise of these rights. When a fund exercises its pro-rata rights in a subsequent round, the shares must independently meet all the requirements of Section 1202 at that time — including the gross asset test. A company may be well under the $50 million threshold during a seed round but may blow past the threshold at Series B, thus destroying the pro-rata rights of any shares received in the Series B even if the shares received at seed round were QSBS.

A frequent cause for failure of a QSBS position to exist in a fund is the conversion of a convertible note. Where a fund invests its money in a SAFE or convertible note, equity shares are never issued until the investor converts those notes into common stock. For Section 1202 purposes, the holding period and gross assets test are met when the conversion occurs, not when the note was issued. A note is issued when the company has $5 million in assets that turns into stock when the company has $60 million in assets will not produce QSBS.

FAQ

FAQ

Can both the GP and LPs take a QSBS exclusion from the same fund?

LPs can claim QSBS exclusions in their share of the qualifying gain, limited by the per-taxpayer, per-issuer limitation. The GP's carried interest is considered a profits interest, which is not considered the purchase of stock. Carried interest is not QSBS. However, if the GP is also investing as an LP with the capital commitment into the fund, those funds may also result in a QSBS gain through the pass-through of the LP position to the investor.

Can a convertible note receive QSBS?

QSBS eligibility for convertible note investments is not considered until the time of conversion. The shares received by the investor at conversion must meet the requirements of Section 1202, including the $50 million gross asset limitation, when the stock is issued by the corporation. The holding period of QSBS shares received at the time of conversion begins at the time of conversion, and not the date when the note was signed. The same analysis applies to SAFE investments.

What if a portfolio company is acquired before the five-year holding period?

If the portfolio company is acquired before the fund meets the five-year holding period in the shares, Section 1202 is not available on such shares. However, Section 1045 is available to allow taxpayers to roll over the gain of the sale of QSBS (over six months held) for a new QSBS and defer the gain within a 60-day period. Section 1045 is available to both individuals and partnerships, which could offer a means to potentially defer gain on an acquisition of a QSBS.

How do fund administrators treat QSBS?

Fund administrators should track, at a minimum for a QSBS eligible investment, the date of the acquisition, the amount of consideration paid in, the nature of the consideration paid (cash or property or services), a copy of the stock purchase agreement or subscription agreement reflecting original issuance, and a certification or representation from the portfolio company regarding the gross asset amount of the portfolio company at the time of issuance of the stock, and that the corporation was qualified as an active business. The information should be tracked in a manner that it may be readily available to the fund administrators and the investment manager at the time of the exit.

Does the leverage of the fund affect the QSBS status of the LPs?

Fund leverage will not directly affect the eligibility of QSBS status. If the LPs are tax exempt investors (e.g., endowment fund, pension funds, IRA) they may not be eligible for the Section 1202 and may be subject to the UBTI on such allocations. Fund formation counsel will want to address those matters with the fund's documents and LP-level disclosure before soliciting such capital.

QSBS eligibility for convertible note investments is determined at the time of conversion, not issuance. The shares received upon conversion must satisfy all Section 1202 requirements — including the $50 million gross asset test — at the moment they are issued. The holding period begins at conversion, not at the date the note was signed. SAFEs follow the same analysis.

What happens to QSBS if a portfolio company is acquired before the five-year holding period?

If a portfolio company is acquired before the fund has held the shares for five years, the Section 1202 exclusion is not available on those shares. However, Section 1045 allows taxpayers to roll over gain from the sale of QSBS held for more than six months into new QSBS within 60 days and defer recognition of the gain. This rollover provision is available to individual taxpayers and partnerships, providing a potential deferral path even when the holding period requirement is not met.

How should fund administrators document QSBS investments?

Fund administrators should maintain, for each QSBS-eligible investment: the date of acquisition, the consideration paid and its character (cash, property, or services), a copy of the stock purchase agreement or subscription document confirming original issue, a certification or representation from the portfolio company regarding its gross asset amount at the time of issuance, and the corporation's active business qualification. This documentation should be stored in a format that can be produced quickly at the time of exit.

Does a fund's use of leverage affect QSBS eligibility for LPs?

The fund's use of leverage does not directly affect the QSBS eligibility of investments. However, LPs who are tax-exempt entities — endowments, pension funds, IRAs — are generally not eligible to claim the Section 1202 exclusion, and gains allocated to them may be subject to unrelated business taxable income considerations. Fund formation counsel should address these issues in the fund's organizational documents and LP-level disclosures before accepting tax-exempt capital.

QSBSfund structureemerging managersSection 1202
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FundCore Team

22 years of institutional fund administration expertise. We build AI-native technology for emerging VC and PE managers who refuse to settle for legacy tools.